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- Yusuke Kawashima, Hirotaka Nagai, Ryo Konno, Masaki Ishikawa, Daisuke Nakajima, Hironori Sato, Ren Nakamura, Tomoyuki Furuyashiki, Osamu Ohara. Single-Shot 10K Proteome Approach: Over 10,000 Protein Identifications by Data-Independent Acquisition-Based Single-Shot Proteomics with Ion Mobility Spectrometry. J. Proteome Res. 2022;21:1418

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- Faria Hasanzadeh Haghighi, Bamdad Riahi-Zanjani, Ehsan Aryan. Gut microbiome and its association with psychiatric disorders, specially schizophrenia. SJKU 2023;28:98

- Joao Parente, Anna Carolyna Gianlorenco, Ingrid Rebello-Sanchez, Minkyung Kim, Jose Mario Prati, Chi Kyung Kim, Hyuk Choi, Jae-Jun Song, Felipe Fregni. Neural, Anti-Inflammatory, and Clinical Effects of Transauricular Vagus Nerve Stimulation in Major Depressive Disorder: A Systematic Review. 2024;27

- Eva Z. Reininghaus, Lisa-Christin Wetzlmair, Frederike T. Fellendorf, Martina Platzer, Robert Queissner, Armin Birner, Ren Pilz, Carlo Hamm, Alexander Maget, Alexandra Rieger, Antonia Prettenhofer, Walter Wurm, Sabrina Mörkl, Nina Dalkner. Probiotic Treatment in Individuals with Euthymic Bipolar Disorder: A Pilot-Study on Clinical Changes and Compliance. Neuropsychobiology 2020;79:71

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- Hyaekang Kim, Soomin Jeon, Jina Kim, Donghyeok Seol, JinChul Jo, Seoae Cho, Heebal Kim. Investigation of memory-enhancing effects of Streptococcus thermophilus EG007 in mice and elucidating molecular and metagenomic characteristics using nanopore sequencing. Sci Rep 2022;12

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- Madia Lozupone, Davide Seripa, Eleonora Stella, Maddalena La Montagna, Vincenzo Solfrizzi, Nicola Quaranta, Federica Veneziani, Alberto Cester, Rodolfo Sardone, Caterina Bonfiglio, Gianluigi Giannelli, Paola Bisceglia, Roberto Bringiotti, Antonio Daniele, Antonio Greco, Antonello Bellomo, Giancarlo Logroscino, Francesco Panza. Innovative biomarkers in psychiatric disorders: a major clinical challenge in psychiatry. Expert Review of Proteomics 2017;14:809

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- Eva M. Medina-Rodriguez, Derik Madorma, Gregory O’Connor, Brittany L. Mason, Dongmei Han, Sapna K. Deo, Mark Oppenheimer, Charles B. Nemeroff, Madhukar H. Trivedi, Sylvia Daunert, Eléonore Beurel. Identification of a Signaling Mechanism by Which the Microbiome Regulates Th17 Cell-Mediated Depressive-Like Behaviors in Mice. AJP 2020;177:974

- Yuka Akagi, Yuzo Takayama, Yuma Nihashi, Azusa Yamashita, Risa Yoshida, Yasuhisa Miyamoto, Yasuyuki S. Kida. Functional engineering of human iPSC‐derived parasympathetic neurons enhances responsiveness to gastrointestinal hormones. FEBS Open Bio 2024;14:63

- Alper Evrensel, Mehmet Emin Ceylan. Treatment Resistance in Psychiatry. 2024.

- Panida Sittipo, Jaeyoon Choi, Soojin Lee, Yun Kyung Lee. The function of gut microbiota in immune-related neurological disorders: a review. J Neuroinflammation 2022;19

- Han Rong, Xin-hui Xie, Jie Zhao, Wen-tao Lai, Ming-bang Wang, Dan Xu, Yang-hui Liu, Yuan-yuan Guo, Shu-xian Xu, Wen-feng Deng, Qi-fan Yang, Li Xiao, Ying-li Zhang, Fu-sheng He, Sheng Wang, Tie-bang Liu. Similarly in depression, nuances of gut microbiota: Evidences from a shotgun metagenomics sequencing study on major depressive disorder versus bipolar disorder with current major depressive episode patients. Journal of Psychiatric Research 2019;113:90

- Alper Evrensel, Barış Önen Ünsalver, Mehmet Emin Ceylan. Frontiers in Psychiatry. 2019.

- Elnaz Vaghef-Mehrabany, Vahid Maleki, Maryam Behrooz, Fatemeh Ranjbar, Mehrangiz Ebrahimi-Mameghani. Can psychobiotics “mood” ify gut? An update systematic review of randomized controlled trials in healthy and clinical subjects, on anti-depressant effects of probiotics, prebiotics, and synbiotics. Clinical Nutrition 2020;39:1395

- Benjamin Wingfield, Coral Lapsley, Andrew McDowell, Georgios Miliotis, Margaret McLafferty, Siobhan M. O’Neill, Sonya Coleman, T. Martin McGinnity, Anthony J. Bjourson, Elaine K. Murray. Variations in the oral microbiome are associated with depression in young adults. Sci Rep 2021;11

- Sa’ed H. Zyoud, Simon Smale, W. Stephen Waring, Waleed M. Sweileh, Samah W. Al-Jabi. Global research trends in microbiome-gut-brain axis during 2009–2018: a bibliometric and visualized study. BMC Gastroenterol 2019;19

- Manoj P. Dandekar, Mani Surya Kumar Palepu, Srilakshmi Satti, Yash Jaiswal, Aditya A. Singh, Surya Prakash Dash, Siva Nageswara Rao Gajula, Rajesh Sonti. Multi-strain Probiotic Formulation Reverses Maternal Separation and Chronic Unpredictable Mild Stress-Generated Anxiety- and Depression-like Phenotypes by Modulating Gut Microbiome–Brain Activity in Rats. ACS Chem. Neurosci. 2022;13:1948

- Matthew Lebovich, Lauren B. Andrews. Surveying the Genetic Design Space for Transcription Factor-Based Metabolite Biosensors: Synthetic Gamma-Aminobutyric Acid and Propionate Biosensors in E. coli Nissle 1917. Front. Bioeng. Biotechnol. 2022;10

- Elena L. Paley. Microbiome Metabolome Brain Vagus Nerve Circuit in Disease and Recovery. 2022.

- Yifei Song, Xinying Wang, Wenxin Ma, Yan Yang, Shuxin Yan, Jiapan Sun, Xiaoyun Zhu, Yang Tang. Graves’ disease as a driver of depression: a mechanistic insight. Front. Endocrinol. 2023;14

- Karolina Skonieczna-Żydecka, Karolina Jakubczyk, Dominika Maciejewska-Markiewicz, Katarzyna Janda, Karolina Kaźmierczak-Siedlecka, Mariusz Kaczmarczyk, Igor Łoniewski, Wojciech Marlicz. Gut Biofactory—Neurocompetent Metabolites within the Gastrointestinal Tract. A Scoping Review. Nutrients 2020;12:3369

- Xiaojie Liu, Huanle Liu, Fuxiao Wei, Di Zhao, Yeze Wang, Meng Lv, Sijun Zhao, Xuemei Qin. Fecal Metabolomics and Network Pharmacology Reveal the Correlations between Constipation and Depression. J. Proteome Res. 2021;20:4771

- Junxing Ma, Yaoxing Chen, Zixu Wang, Ran Wang, Yulan Dong. Lactiplantibacillus plantarum CR12 attenuates chronic unforeseeable mild stress induced anxiety and depression-like behaviors by modulating the gut microbiota-brain axis. Journal of Functional Foods 2023;107:105710

- Richard T. Liu, Aislinn D. Rowan-Nash, Ana E. Sheehan, Rachel F.L. Walsh, Christina M. Sanzari, Benjamin J. Korry, Peter Belenky. Reductions in anti-inflammatory gut bacteria are associated with depression in a sample of young adults. Brain, Behavior, and Immunity 2020;88:308

- Vincent Chin-Hung Chen, Shu-I Wu. An exploratory analysis on the association between suicidal ideation and the microbiome in patients with or without major depressive disorder. Journal of Affective Disorders 2025;370:362

- David A Wiss, Marjan Javanbakht, Michael J Li, Michael Prelip, Robert Bolan, Steve Shoptaw, Pamina M Gorbach. Food insecurity partially mediates the association between drug use and depressive symptoms among men who have sex with men in Los Angeles, California. Public Health Nutr. 2021;24:3977

- Deepak Rathour, Shruti Shah, Sabiya Khan, Pankaj Kumar Singh, Saurabh Srivastava, Shashi Bala Singh, Dharmendra Kumar Khatri. Role of gut microbiota in depression: Understanding molecular pathways, recent research, and future direction. Behavioural Brain Research 2023;436:114081

- Sharon L. Norling. Integrative and Functional Medical Nutrition Therapy. 2023.

- Antonio Inserra, Geraint B. Rogers, Julio Licinio, Ma‐Li Wong. The Microbiota‐Inflammasome Hypothesis of Major Depression. BioEssays 2018;40

- Nicole S. Kirchoff, Monique A.R. Udell, Thomas J. Sharpton. The gut microbiome correlates with conspecific aggression in a small population of rescued dogs(Canis familiaris). 2019;7:e6103

- Madhusmita Dehingia, Supriyo Sen, Bhuwan Bhaskar, Tulsi K. Joishy, Manab Deka, Narayan C. Talukdar, Mojibur R. Khan. Ethnicity influences gut metabolites and microbiota of the tribes of Assam, India. Metabolomics 2017;13

- Barış Önen Ünsalver, Alper Evrensel, Mehmet Emin Ceylan. Psoriasis and depression: a commentary on “In psoriasis, levels of hope and quality of life are linked”. Arch Dermatol Res 2016;308:455

- Christopher Hobbs. Biochemical Engineering and Biotechnology of Medicinal Mushrooms. 2016.

- Declan J. Bolton, Lucy J. Robertson. Mental Health Disorders Associated with Foodborne Pathogens. Journal of Food Protection 2016;79:2005

- Alper Evrensel, Nevzat Tarhan. Translational Research Methods for Major Depressive Disorder. 2016.

- Teng Ma, Hao Jin, Lai-Yu Kwok, Zhihong Sun, Min-Tze Liong, Heping Zhang. Probiotic consumption relieved human stress and anxiety symptoms possibly via modulating the neuroactive potential of the gut microbiota. Neurobiology of Stress 2021;14:100294

- Alper Evrensel, Mehmet Emin Ceylan. Microbiome: The Missing Link in Neuropsychiatric Disorders. EMJ Innov 2017:83

- Aurora Perez-Cornago, Almudena Sanchez-Villegas, Maira Bes-Rastrollo, Alfredo Gea, Patricio Molero, Francisca Lahortiga-Ramos, Miguel Angel Martínez-González. Intake of High-Fat Yogurt, but Not of Low-Fat Yogurt or Prebiotics, Is Related to Lower Risk of Depression in Women of the SUN Cohort Study. The Journal of Nutrition 2016;146:1731

- Mansoor Khaledi, Fatemeh Sameni, Abolfazl Gholipour, Shahnaz Shahrjerdi, Reza Golmohammadi, Hadi Esmaeili Gouvarchin Ghaleh, Behnam Poureslamfar, Jaber Hemmati, Niloofar Mobarezpour, Yaser Eshaghi Milasi, Fatemeh Rad, Mahtab Mehboodi, Parviz Owlia. Potential role of gut microbiota in major depressive disorder: A review. Heliyon 2024;10:e33157

- Marianne Kuzujanakis. Anxiety in today’s children and young adults. Gifted Education International 2021;37:54

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- Lee Hill, Jelena Popov, Melanie Figueiredo, Valentina Caputi, Emily Hartung, Michal Moshkovich, Nikhil Pai. Protocol for a systematic review on the role of the gut microbiome in paediatric neurological disorders. Acta Neuropsychiatr. 2021;33:211

- Irina Cezara Văcărean-Trandafir, Roxana-Maria Amărandi, Iuliu Cristian Ivanov, Loredana Mihaiela Dragoș, Mihaela Mențel, Ştefan Iacob, Ana-Maria Muşină, Elena-Roxana Bărgăoanu, Cristian Ene Roată, Ștefan Morărașu, Valeri Țuțuianu, Marcel Ciobanu, Mihail-Gabriel Dimofte. Impact of antibiotic prophylaxis on gut microbiota in colorectal surgery: insights from an Eastern European stewardship study. Front. Cell. Infect. Microbiol. 2025;14

- Brent J. Gawey, Ruben A. Mars, Purna C. Kashyap. The role of the gut microbiome in disorders of gut–brain interaction. The FEBS Journal 2024

- Pragathi Priyadharsini Balasubramani, Anuja Walke, Gillian Grennan, Andrew Perley, Suzanna Purpura, Dhakshin Ramanathan, Todd P. Coleman, Jyoti Mishra. Simultaneous Gut-Brain Electrophysiology Shows Cognition and Satiety Specific Coupling. Sensors 2022;22:9242

- Hélène Viruega, Corinne Galy, Célia Loriette, Stéphane Jacquot, Jean Louis Houpeau, Manuel Gaviria. Breast Cancer: How Hippotherapy Bridges the Gap between Healing and Recovery—A Randomized Controlled Clinical Trial. Cancers 2023;15:1317

- Nuno Borges, Tina Keller-Costa, Gracinda M.M. Sanches-Fernandes, António Louvado, Newton C.M. Gomes, Rodrigo Costa. Bacteriome Structure, Function, and Probiotics in Fish Larviculture: The Good, the Bad, and the Gaps. Annu. Rev. Anim. Biosci. 2021;9:423

- Li Wang, Xuejiao Wu, Yuhao Ma, Xian Li, Jingfeng Zhang, Lichao Zhao. Supplementation with soy isoflavones alleviates depression-like behaviour via reshaping the gut microbiota structure. Food Funct. 2021;12:4995

- Peter Philip James Jackson, Anisha Wijeyesekera, Robert Adrian Rastall. Oligofructose alone and in combination with 2′fucosyllactose induces physiologically relevant changes in γ-aminobutyric acid and organic acid production compared to sole 2′fucosyllactose supplementation: an in vitro study. 2023;99

- Jonathan D. Grinstein. Kallyope Is Digesting Gut–Brain Biology into Medicines. GEN Biotechnology 2023;2:338

- Ibrahim Nadeem, Mohammed Z. Rahman, Yasser Ad‐Dab'bagh, Mahmood Akhtar. Effect of probiotic interventions on depressive symptoms: A narrative review evaluating systematic reviews. Psychiatry Clin Neurosci 2019;73:154

- Igor Łoniewski, Agata Misera, Karolina Skonieczna-Żydecka, Mariusz Kaczmarczyk, Karolina Kaźmierczak-Siedlecka, Błażej Misiak, Wojciech Marlicz, Jerzy Samochowiec. Major Depressive Disorder and gut microbiota – Association not causation. A scoping review. Progress in Neuro-Psychopharmacology and Biological Psychiatry 2021;106:110111

- Alper Evrensel, Barış Önen Ünsalver, Mehmet Emin Ceylan. Neuroinflammation, Gut-Brain Axis and Depression. Psychiatry Investig 2020;17:2

- Florencia Andrea Ceppa, Luca Izzo, Lorenzo Sardelli, Ilaria Raimondi, Marta Tunesi, Diego Albani, Carmen Giordano. Human Gut-Microbiota Interaction in Neurodegenerative Disorders and Current Engineered Tools for Its Modeling. Front. Cell. Infect. Microbiol. 2020;10

- Young-Kook Kim, Oh Yoen Kim, Juhyun Song. Alleviation of Depression by Glucagon-Like Peptide 1 Through the Regulation of Neuroinflammation, Neurotransmitters, Neurogenesis, and Synaptic Function. Front. Pharmacol. 2020;11

- Alper Evrensel, Mehmet Emin Ceylan. Fecal Microbiota Transplantation and Its Usage in Neuropsychiatric Disorders. Clin Psychopharmacol Neurosci 2016;14:231

- Yin-To Liao, Ming-Hong Hsieh, Yao-Hsu Yang, Ying-Ching Wang, Ching-Shu Tsai, Vincent Chin-Hung Chen, Michael Gossop. Association between depression and enterovirus infection. 2017;96:e5983

- Min-Hyeok Kim, Donghyun Kim, Jong Hwan Sung. A Gut-Brain Axis-on-a-Chip for studying transport across epithelial and endothelial barriers. Journal of Industrial and Engineering Chemistry 2021;101:126

- Sudhir K Dutta, Sandeep Verma, Vardhmaan Jain, Balarama K Surapaneni, Rakesh Vinayek, Laila Phillips, Padmanabhan P Nair. Parkinson’s Disease: The Emerging Role of Gut Dysbiosis, Antibiotics, Probiotics, and Fecal Microbiota Transplantation. J Neurogastroenterol Motil 2019;25:363

- Michael Ganci, Emra Suleyman, Henry Butt, Michelle Ball. The role of the brain–gut–microbiota axis in psychology: The importance of considering gut microbiota in the development, perpetuation, and treatment of psychological disorders. Brain and Behavior 2019;9

- Yeshun Wu, Bin Zhu, Zijun Chen, Jiahao Duan, Ailin Luo, Ling Yang, Chun Yang. New Insights Into the Comorbidity of Coronary Heart Disease and Depression. Current Problems in Cardiology 2021;46:100413

- Michael Shaffer, Abigail J.S. Armstrong, Vanessa V. Phelan, Nichole Reisdorph, Catherine A. Lozupone. Microbiome and metabolome data integration provides insight into health and disease. Translational Research 2017;189:51

- Valerie J. Stull, Elijah Finer, Rachel S. Bergmans, Hallie P. Febvre, Colin Longhurst, Daniel K. Manter, Jonathan A. Patz, Tiffany L. Weir. Impact of Edible Cricket Consumption on Gut Microbiota in Healthy Adults, a Double-blind, Randomized Crossover Trial. Sci Rep 2018;8

- Xun Yang, Guowei Wang, Xue Gong, Cheng Huang, Qiang Mao, Li Zeng, Peng Zheng, Yinhua Qin, Fei Ye, Bin Lian, Chanjuan Zhou, Haiyang Wang, Wei Zhou, Peng Xie. Effects of chronic stress on intestinal amino acid pathways. Physiology & Behavior 2019;204:199

- Sofía Alfaro-González, Miriam Garrido-Miguel, Carlos Pascual-Morena, Diana P. Pozuelo-Carrascosa, Rubén Fernández-Rodríguez, José Alberto Martínez-Hortelano, Arthur E. Mesas, Vicente Martínez-Vizcaíno. The Association Between Adherence to the Mediterranean Diet and Depression and Anxiety Symptoms in University Students: The Mediating Role of Lean Mass and the Muscle Strength Index. Nutrients 2025;17:346

- Narek Israelyan, Kara Gross Margolis. Reprint of: Serotonin as a link between the gut-brain-microbiome axis in autism spectrum disorders. Pharmacological Research 2019;140:115

- Yanqiu Chen, Mei Wan, Yi Zhong, Tingfang Gao, Yuehan Zhang, Fen Yan, Da Huang, Yuanzi Wu, Zuquan Weng. Partially Hydrolyzed Guar Gum Modulates Gut Microbiota, Regulates the Levels of Neurotransmitters, and Prevents CUMS‐Induced Depressive‐Like Behavior in Mice. Molecular Nutrition Food Res 2021;65

- Xueping Zhang, Lei Chen, Tao Zhang, Ryu Gabo, Qianying Wang, Zhuotai Zhong, Mengxi Yao, Wei Wei, Xiaolan Su. Duodenal microbiota dysbiosis in functional dyspepsia and its potential role of the duodenal microbiota in gut–brain axis interaction: a systematic review. Front. Microbiol. 2024;15

- Hu Lou, Xue Liu, Ping Liu. Mechanism and implications of pro-nature physical activity in antagonizing psychological stress: the key role of microbial-gut-brain axis. Front. Psychol. 2023;14

- Xue Gong, Cheng Huang, Xun Yang, Qiang Mao, Li Zeng, Peng Zheng, Juncai Pu, Jianjun Chen, Haiyang Wang, Bing Xu, Chanjuan Zhou, Peng Xie. Proteomic analysis of the intestine reveals SNARE-mediated immunoregulatory and amino acid absorption perturbations in a rat model of depression. Life Sciences 2019;234:116778

- Adrianna M. Ratajska, Connor B. Etheridge, Francesca V. Lopez, Lauren E. Kenney, Katie Rodriguez, Rachel N. Schade, Joshua Gertler, Dawn Bowers. The Relationship Between Autonomic Dysfunction and Mood Symptoms in De Novo Parkinson’s Disease Patients Over Time. J Geriatr Psychiatry Neurol 2024;37:242

- Yumi Kisaka, Midori Yamamoto, Kana Yanase, Kenichi Sakurai, Akifumi Eguchi, Masahiro Watanabe, Chisato Mori, Emiko Todaka. Association Between Antibiotic Exposure During Pregnancy and Postpartum Depressive Symptoms: The Japan Environment and Children's Study. Research in Nursing & Health 2025

- Mohamad Khalil, Agostino Di Ciaula, Laura Mahdi, Nour Jaber, Domenica Maria Di Palo, Annarita Graziani, Gyorgy Baffy, Piero Portincasa. Unraveling the Role of the Human Gut Microbiome in Health and Diseases. Microorganisms 2024;12:2333

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- Xiao-Fang Wang, Xue Chen, Yong Tang, Jian-Ming Wu, Da-Lian Qin, Lu Yu, Chong-Lin Yu, Xiao-Gang Zhou, An-Guo Wu. The Therapeutic Potential of Plant Polysaccharides in Metabolic Diseases. Pharmaceuticals 2022;15:1329

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- Georgia Zoumpopoulou, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou. Dairy probiotics: Beyond the role of promoting gut and immune health. International Dairy Journal 2017;67:46

- Alexandra L. Chang-Graham, Heather A. Danhof, Melinda A. Engevik, Catherine Tomaro-Duchesneau, Umesh C. Karandikar, Mary K. Estes, James Versalovic, Robert A. Britton, Joseph M. Hyser. Human Intestinal Enteroids With Inducible Neurogenin-3 Expression as a Novel Model of Gut Hormone Secretion. Cellular and Molecular Gastroenterology and Hepatology 2019;8:209

- Aya Abe, So Morishima, Mahendra P. Kapoor, Ryo Inoue, Takamitsu Tsukahara, Yuji Naito, Makoto Ozeki. Partially hydrolyzed guar gum is associated with improvement in gut health, sleep, and motivation among healthy subjects. J. Clin. Biochem. Nutr. 2023;72:189

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- Meng Yu, Hongmei Jia, Chao Zhou, Yong Yang, Yang Zhao, Maohua Yang, Zhongmei Zou. Variations in gut microbiota and fecal metabolic phenotype associated with depression by 16S rRNA gene sequencing and LC/MS-based metabolomics. Journal of Pharmaceutical and Biomedical Analysis 2017;138:231
